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SpNeigh: spatial neighborhood and differential expression analysis for high-resolution spatial transcriptomics
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Optimal gene panel selection for targeted spatial transcriptomics experiments
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SMIntegration: A web tool for comprehensive spatial metabolomics and transcriptomics integrated analysis and visualization
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Region-aware bridge modeling enables interpretable mesoscale representation of spatial transcriptomic tissue sections
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Spatial Transcriptomic Atlas Reveals That Forkhead Box O3‐Mediated Mitochondrial Dynamics Imbalance Drives Premature Ovarian Insufficiency in Mice
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Comparative evaluation of gene selection approaches in transcriptomics: bias correction and visualization with TransPro
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scDenorm: a denormalization tool for integrating single-cell transcriptomics data
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Dissecting glioblastoma risk signatures in the tumor immune microenvironment based on multi-dimensional transcriptomics
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Transcriptomics Analysis Reveals Dual Axes of Metabolic and Immune Dysregulation in the Progression of NAFLD to HCC
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Transcriptomic Evidence of Mitochondrial Double‐Stranded RNA Accumulation in Brain Aging and Alzheimer's Disease
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CPSM: an R package for cancer patient survival risk model using transcriptomics and clinical data
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SCpubr: a user-friendly R-package for generating publication-ready visualizations of single-cell transcriptome analyses
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Leveraging machine learning and network biology approaches to predict brain gene expression from blood transcriptomes
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Persistent transcriptomic changes following repeated exposure to wood smoke in nonhuman primate airway epithelial cells
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Multiplexed Transcriptomics for Screening Drug Combinations and Defining the Mechanism of Action of HCC Therapeutics at Single‐Cell Resolution
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A systematic benchmark of bioinformatics methods for single-cell and spatial RNA-seq nanopore long reads data
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Population-level transcriptomic datasets from two benthic invertebrates exposed to long-term experimental warming and acidification
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Differential transcriptomic landscapes of multiple organs from SARS-CoV-2 early infected rhesus macaques
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ClusterGraph: a new tool for visualisation and compression of multidimensional data
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Streamlining counterfactual ecosystem restoration and conservation impact evaluation in R with the spatialBACI package
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Network‐Level Convergence of Adiposity‐Related Gray Matter Alterations: A Coordinate‐Based Connectome Mapping Meta‐Analysis With Imaging Transcriptomics
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RNAStructuromeDB: a transcriptome-wide database of predicted RNA secondary structures with integrated APIs for functional annotation and RNA-targeted drug discovery
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Population‐level analyses reveal contrasting landscapes of gene expression divergence and evolution between male and female transcriptome lineages in the house mouse
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New algorithms for unsupervised cell clustering from scRNA-seq data