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Long-read nanopore shotgun metagenomic DNA sequencing for river biodiversity, wildlife, pollution, and environmental health monitoring
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Lancet2: Improved and accelerated somatic variant calling with joint multi-sample local assembly graphs
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NEXT-scASV: a Nextflow pipeline for allele-specific variant calling from single-cell RNA-seq data
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LORA: a polymorphic multi-sample long read assembly pipeline
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Sarand: exploring antimicrobial resistance gene neighbourhoods in complex metagenomic assembly graphs
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PopMAG: a Nextflow pipeline for population genetics analysis based on metagenome-assembled genomes
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Cancer genome standards for long-read sequencing using cancer cell line mixtures
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FEDRANN: effective long-read overlap detection based on dimensionality reduction and approximate nearest neighbors
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metaWEPP: leveraging biobank-scale intra-species phylogenies for near-haplotype resolution in metagenomic analysis
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A systematic benchmark of bioinformatics methods for single-cell and spatial RNA-seq nanopore long reads data
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Measurement of Hemoglobin Variants in Hemoglobinopathies
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PySUNDIALS : Providing python bindings to a robust suite of mathematical tools for computational systems biology
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Altitude‐Associated Divergence of the Gut Microbiome in Endangered Forest Musk Deer: Evidence From Integrated Metagenomics, Metabolomics, and Culturomics
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Call for Papers - (FREE OF CHARGE) / November 2012
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Simulation and database software for computational systems biology : PySCes and JWS Online
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Simulating read length, sequencing depth and base-call quality for RNAsequencing experimental design
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PathoFact 2.0: an integrative pipeline for the prediction of antimicrobial resistance genes, virulence factors, toxins and toxin-associated proteins, and biosynthetic gene clusters in metagenomes
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Actinomycete biodiversity assessed by culture-based and metagenomic investigations of three distinct samples in Cape Town, South Africa
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Improved RNA–DNA interaction calling suggests RNA-based gene regulation of phenotypic transitions
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Inferring variant-specific effective reproduction numbers from combined case and sequencing data
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Targeted proteomics for the detection of androgen receptor variants in preclinical models of castration-resistant prostate cancer
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An Optimised Computational Framework for Cross-Cohort Metagenomic Classification Using P-Value Statistical Filtering
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Within-host diversity and phased variant analysis reveal structures and recombination of Helicobacter pylori subpopulations in stomach
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Correction to ‘SyMetrics: an integrated machine learning model for evaluating the pathogenicity of synonymous variants in the human genome’
