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The fundamental role of spectral scattering in the ocean colour Phytoplankton Functional Type signal
There is increasing interdisciplinary interest in phytoplankton community dynamics as the growing environmental problems of water quality (particularly eutrophication) and climate change demand attention. This has led to a pressing need for improved biophysical and causal understanding of Phytoplank...
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| Format: | Thesis |
| Language: | English |
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Department of Oceanography
2018
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| _version_ | 1867613285178671104 |
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| access_status_str | Open Access |
| author | Robertson Lain, Elisabeth |
| author2 | Reason, Christopher |
| author_browse | Reason, Christopher Robertson Lain, Elisabeth |
| author_facet | Reason, Christopher Robertson Lain, Elisabeth |
| author_sort | Robertson Lain, Elisabeth |
| collection | Thesis |
| description | There is increasing interdisciplinary interest in phytoplankton community dynamics as the growing environmental problems of water quality (particularly eutrophication) and climate change demand attention. This has led to a pressing need for improved biophysical and causal understanding of Phytoplankton Functional Type (PFT) optical signals, in order that satellite radiometry may be used to detect ecologically relevant phytoplankton assemblage changes. This understanding can best be achieved with biophysically and biogeochemically consistent phytoplankton Inherent Optical Property (IOP) models, as it is only via modelling that phytoplankton assemblage characteristics can be examined systematically in relation to the bulk optical water-leaving signal. Harmful Algal Bloom (HAB) conditions in the Southern Benguela and various inland waters of Southern Africa require continuous observation by satellite due to the potential for significant negative environmental impacts. Current oceanic bio-optical models do not perform well in elevated Chlorophyll a conditions, but the high biomass conditions of Southern African inland and coastal waters lend themselves extremely well to the development of phytoplankton IOP models as the water-leaving signal is overwhelmingly phytoplankton-dominated. An initial validation of a new model of Equivalent Algal Populations (EAP) is presented here, and comparison is made with two prominent phytoplankton IOP models. The EAP model places emphasis on explicit biophysical modelling of the phytoplankton population as a holistic determinant of IOPs. By necessity due to its origins in highly scattering waters, a distinctive attribute of the EAP model is its comprehensive handling of the spectral and angular character of phytoplankton scattering. This emphasis is shown to have an impact on the ability to retrieve the detailed phytoplankton spectral scattering information necessary for PFT applications and to successfully simulate waterleaving reflectance across wide ranges of physical environments, biomass, and assemblage characteristics. The accurate description of a water body's Volume Scattering Function (VSF), and hence its phase functions, is critical to the determination of the constituent IOPs, the associated spectral water-leaving reflectance, and consequently the retrieval of PFT information. The EAP model offers the ability to provide phytoplankton population-specific phase functions, unveiling an opportunity to gain further insight into the causality of the PFT signal. This is a new modelling capability, and its application in case studies and sensitivity analyses has resulted in improved understanding of the PFT/assemblage-related signal, in particular the discovery that phytoplankton spectral scattering is the primary driver of the PFT-related signal. The required thresholds of PFT detection with respect to biomass, IOP budget and assemblage effective diameter are quantified. Key findings are that the backscattering-driven signal in the 520 to 600 nm region is the critical PFT identifier at marginal biomass, and that while PFT information does appear at blue and red wavelengths, it is compromised by biomass/gelbstoff ambiguity in the blue and low signal in the red, due primarily to absorption by water. The key findings and recommendations are hoped to provide considerable insight into PFT approaches with regard to in situ observation, sensor development and algorithm optimisation for the next generation of PFT investigations. |
| format | Thesis |
| id | oai:open.uct.ac.za:11427/27856 |
| institution | University of Cape Town (South Africa) |
| language | eng |
| last_indexed | 2026-06-10T12:33:41.762Z |
| license_str | Not specified — see source repository |
| provenance_str_mv | Harvested via OAI-PMH from UCTD — University of Cape Town Open Access Repository |
| publishDate | 2018 |
| publishDateRange | 2018 |
| publishDateSort | 2018 |
| publisher | Department of Oceanography |
| publisherStr | Department of Oceanography |
| record_format | dspace |
| source_str | UCTD — University of Cape Town Open Access Repository |
| spelling | oai:open.uct.ac.za:11427/27856 The fundamental role of spectral scattering in the ocean colour Phytoplankton Functional Type signal Robertson Lain, Elisabeth Reason, Christopher Oceanography There is increasing interdisciplinary interest in phytoplankton community dynamics as the growing environmental problems of water quality (particularly eutrophication) and climate change demand attention. This has led to a pressing need for improved biophysical and causal understanding of Phytoplankton Functional Type (PFT) optical signals, in order that satellite radiometry may be used to detect ecologically relevant phytoplankton assemblage changes. This understanding can best be achieved with biophysically and biogeochemically consistent phytoplankton Inherent Optical Property (IOP) models, as it is only via modelling that phytoplankton assemblage characteristics can be examined systematically in relation to the bulk optical water-leaving signal. Harmful Algal Bloom (HAB) conditions in the Southern Benguela and various inland waters of Southern Africa require continuous observation by satellite due to the potential for significant negative environmental impacts. Current oceanic bio-optical models do not perform well in elevated Chlorophyll a conditions, but the high biomass conditions of Southern African inland and coastal waters lend themselves extremely well to the development of phytoplankton IOP models as the water-leaving signal is overwhelmingly phytoplankton-dominated. An initial validation of a new model of Equivalent Algal Populations (EAP) is presented here, and comparison is made with two prominent phytoplankton IOP models. The EAP model places emphasis on explicit biophysical modelling of the phytoplankton population as a holistic determinant of IOPs. By necessity due to its origins in highly scattering waters, a distinctive attribute of the EAP model is its comprehensive handling of the spectral and angular character of phytoplankton scattering. This emphasis is shown to have an impact on the ability to retrieve the detailed phytoplankton spectral scattering information necessary for PFT applications and to successfully simulate waterleaving reflectance across wide ranges of physical environments, biomass, and assemblage characteristics. The accurate description of a water body's Volume Scattering Function (VSF), and hence its phase functions, is critical to the determination of the constituent IOPs, the associated spectral water-leaving reflectance, and consequently the retrieval of PFT information. The EAP model offers the ability to provide phytoplankton population-specific phase functions, unveiling an opportunity to gain further insight into the causality of the PFT signal. This is a new modelling capability, and its application in case studies and sensitivity analyses has resulted in improved understanding of the PFT/assemblage-related signal, in particular the discovery that phytoplankton spectral scattering is the primary driver of the PFT-related signal. The required thresholds of PFT detection with respect to biomass, IOP budget and assemblage effective diameter are quantified. Key findings are that the backscattering-driven signal in the 520 to 600 nm region is the critical PFT identifier at marginal biomass, and that while PFT information does appear at blue and red wavelengths, it is compromised by biomass/gelbstoff ambiguity in the blue and low signal in the red, due primarily to absorption by water. The key findings and recommendations are hoped to provide considerable insight into PFT approaches with regard to in situ observation, sensor development and algorithm optimisation for the next generation of PFT investigations. 2018-04-24T14:02:16Z 2018-04-24T14:02:16Z 2018 Doctoral Thesis Doctoral PhD http://hdl.handle.net/11427/27856 eng application/pdf Department of Oceanography Faculty of Science University of Cape Town |
| spellingShingle | Oceanography Robertson Lain, Elisabeth The fundamental role of spectral scattering in the ocean colour Phytoplankton Functional Type signal |
| thesis_degree_str | Doctoral |
| title | The fundamental role of spectral scattering in the ocean colour Phytoplankton Functional Type signal |
| title_full | The fundamental role of spectral scattering in the ocean colour Phytoplankton Functional Type signal |
| title_fullStr | The fundamental role of spectral scattering in the ocean colour Phytoplankton Functional Type signal |
| title_full_unstemmed | The fundamental role of spectral scattering in the ocean colour Phytoplankton Functional Type signal |
| title_short | The fundamental role of spectral scattering in the ocean colour Phytoplankton Functional Type signal |
| title_sort | fundamental role of spectral scattering in the ocean colour phytoplankton functional type signal |
| topic | Oceanography |
| url | http://hdl.handle.net/11427/27856 |
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