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Bone age estimation using machine learning approach: An assessment using hand and wrist bones of South African children
Skeletal maturation is influenced by various factors such as genetics, hormonal secretions, and nutrition. Establishing a skeletal maturity level in children becomes necessary when a deviation from the standard growth patterns may indicate signs of diseases; and whether that individual is a minor. B...
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| Format: | Thesis |
| Language: | English |
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Department of Human Biology
2024
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| _version_ | 1867613257002385408 |
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| access_status_str | Open Access |
| author | Nam, Yuseung |
| author2 | Friedling, Louise |
| author_browse | Friedling, Louise Nam, Yuseung |
| author_facet | Friedling, Louise Nam, Yuseung |
| author_sort | Nam, Yuseung |
| collection | Thesis |
| description | Skeletal maturation is influenced by various factors such as genetics, hormonal secretions, and nutrition. Establishing a skeletal maturity level in children becomes necessary when a deviation from the standard growth patterns may indicate signs of diseases; and whether that individual is a minor. Bone Age Assessment (BAA) achieves this, as it is a clinical process used to establish an individual's biological profile. A large proportion of the South African population resides in rural areas where the fully functional civil registration system is limited. Many individuals remain unregistered on the national database, bringing about various challenges. This reduces the likelihood of unregistered children receiving favourable treatment in judicial cases or access to amenities at juvenile rehabilitation centres. Moreover, it puts them under the same threat of abuse and discrimination as adult offenders. Typical clinical methods for BAA are the Greulich and Pyle (GP) and Tanner and Whitehouse (TW) methods using wrist radiographs of the left-hand. Although these methods have been updated throughout the decades, they rely on experienced radiologists' manual power, which is highly time-consuming, resulting in intra- and inter-observer errors. Our study uses a machine learning method to train and automatically predict bone age with carpal bones from a sample of South African children to mitigate these problems. Two datasets of 12,611 North American population (RSNA) and 400 South African population (SA) left-hand X-ray radiographs (from a LODOX machine) were used from birth to 19 years of age. These radiographs of the two datasets were pre-processed to remove unnecessary labels, remove the background, and straighten the X-ray image. The first experiment used the pretrained models, Xception, InceptionV3, MobileNet, and VGG-16, using the pre-processed and unprocessed datasets and comparing their performance. The pre-processed dataset was selected for model benchmarking to find the best-performing model for bone age estimation out of the four pre-trained models. Scatterplots of the four models were plotted to visualise their generalisation performance on bone age estimation. Xception was the best-performing bone age model used to determine bone age prediction using combined RSNA and SA datasets as train sets. Due to the overwhelming difference in sample sizes between RSNA and SA datasets, imbalanced and balanced data training was applied to overcome the difference. The best-performing model - Xception, achieved a mean absolute error of 5.70 months when using population-specific pre-processed data. Bone age estimation benefits more from a machine learning model than a simple linear regression model when using a raw X-ray image input. The combined RSNA (10,000) + SA (300) train set of the Xception model achieved an MAE of 7.43 months from RSNA and 14.36 months from the SA dataset. The results suggest that bone age estimation using different populations as train and test sets contributes to less accurate bone age prediction, indicating a need for a population-specific model. The imbalanced and balanced data training proved that more samples for the South African population are needed for accurate bone age prediction, as bone age MAE decreased with an increasing number of minority SA datasets increased. The population-specific bone age model significantly outperformed the manual methods. The population of South Africa is diverse and distinctive, with a wide range of ancestral and genetic backgrounds that might impact bone growth. Future studies should focus on creating a bone age estimation model tailored to this unique population. |
| format | Thesis |
| id | oai:open.uct.ac.za:11427/39747 |
| institution | University of Cape Town (South Africa) |
| language | eng |
| last_indexed | 2026-06-10T12:33:15.376Z |
| license_str | Not specified — see source repository |
| provenance_str_mv | Harvested via OAI-PMH from UCTD — University of Cape Town Open Access Repository |
| publishDate | 2024 |
| publishDateRange | 2024 |
| publishDateSort | 2024 |
| publisher | Department of Human Biology |
| publisherStr | Department of Human Biology |
| record_format | dspace |
| source_str | UCTD — University of Cape Town Open Access Repository |
| spelling | oai:open.uct.ac.za:11427/39747 Bone age estimation using machine learning approach: An assessment using hand and wrist bones of South African children Nam, Yuseung Friedling, Louise Medicine Skeletal maturation is influenced by various factors such as genetics, hormonal secretions, and nutrition. Establishing a skeletal maturity level in children becomes necessary when a deviation from the standard growth patterns may indicate signs of diseases; and whether that individual is a minor. Bone Age Assessment (BAA) achieves this, as it is a clinical process used to establish an individual's biological profile. A large proportion of the South African population resides in rural areas where the fully functional civil registration system is limited. Many individuals remain unregistered on the national database, bringing about various challenges. This reduces the likelihood of unregistered children receiving favourable treatment in judicial cases or access to amenities at juvenile rehabilitation centres. Moreover, it puts them under the same threat of abuse and discrimination as adult offenders. Typical clinical methods for BAA are the Greulich and Pyle (GP) and Tanner and Whitehouse (TW) methods using wrist radiographs of the left-hand. Although these methods have been updated throughout the decades, they rely on experienced radiologists' manual power, which is highly time-consuming, resulting in intra- and inter-observer errors. Our study uses a machine learning method to train and automatically predict bone age with carpal bones from a sample of South African children to mitigate these problems. Two datasets of 12,611 North American population (RSNA) and 400 South African population (SA) left-hand X-ray radiographs (from a LODOX machine) were used from birth to 19 years of age. These radiographs of the two datasets were pre-processed to remove unnecessary labels, remove the background, and straighten the X-ray image. The first experiment used the pretrained models, Xception, InceptionV3, MobileNet, and VGG-16, using the pre-processed and unprocessed datasets and comparing their performance. The pre-processed dataset was selected for model benchmarking to find the best-performing model for bone age estimation out of the four pre-trained models. Scatterplots of the four models were plotted to visualise their generalisation performance on bone age estimation. Xception was the best-performing bone age model used to determine bone age prediction using combined RSNA and SA datasets as train sets. Due to the overwhelming difference in sample sizes between RSNA and SA datasets, imbalanced and balanced data training was applied to overcome the difference. The best-performing model - Xception, achieved a mean absolute error of 5.70 months when using population-specific pre-processed data. Bone age estimation benefits more from a machine learning model than a simple linear regression model when using a raw X-ray image input. The combined RSNA (10,000) + SA (300) train set of the Xception model achieved an MAE of 7.43 months from RSNA and 14.36 months from the SA dataset. The results suggest that bone age estimation using different populations as train and test sets contributes to less accurate bone age prediction, indicating a need for a population-specific model. The imbalanced and balanced data training proved that more samples for the South African population are needed for accurate bone age prediction, as bone age MAE decreased with an increasing number of minority SA datasets increased. The population-specific bone age model significantly outperformed the manual methods. The population of South Africa is diverse and distinctive, with a wide range of ancestral and genetic backgrounds that might impact bone growth. Future studies should focus on creating a bone age estimation model tailored to this unique population. 2024-05-30T09:34:58Z 2024-05-30T09:34:58Z 2023 2024-05-28T08:23:28Z Thesis / Dissertation Masters MSc http://hdl.handle.net/11427/39747 eng application/pdf Department of Human Biology Faculty of Health Sciences |
| spellingShingle | Medicine Nam, Yuseung Bone age estimation using machine learning approach: An assessment using hand and wrist bones of South African children |
| thesis_degree_str | Master's |
| title | Bone age estimation using machine learning approach: An assessment using hand and wrist bones of South African children |
| title_full | Bone age estimation using machine learning approach: An assessment using hand and wrist bones of South African children |
| title_fullStr | Bone age estimation using machine learning approach: An assessment using hand and wrist bones of South African children |
| title_full_unstemmed | Bone age estimation using machine learning approach: An assessment using hand and wrist bones of South African children |
| title_short | Bone age estimation using machine learning approach: An assessment using hand and wrist bones of South African children |
| title_sort | bone age estimation using machine learning approach an assessment using hand and wrist bones of south african children |
| topic | Medicine |
| url | http://hdl.handle.net/11427/39747 |
| work_keys_str_mv | AT namyuseung boneageestimationusingmachinelearningapproachanassessmentusinghandandwristbonesofsouthafricanchildren |