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A quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening
An estimated two billion people globally are believed to harbour latent tuberculosis infection (LTBI), which is a precursor to active tuberculosis (TB). Immunocompromising conditions, such as human immunodeficiency virus (HIV) infection, diabetes, chronic renal failure, and chemotherapy, are associa...
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| Format: | Thesis |
| Language: | English English |
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Department of Human Biology
2026
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| _version_ | 1867613213920591872 |
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| access_status_str | Open Access |
| author | Oladokun, Ajibola Samson |
| author2 | Malila, Bessie |
| author_browse | Malila, Bessie Oladokun, Ajibola Samson |
| author_facet | Malila, Bessie Oladokun, Ajibola Samson |
| author_sort | Oladokun, Ajibola Samson |
| collection | Thesis |
| description | An estimated two billion people globally are believed to harbour latent tuberculosis infection (LTBI), which is a precursor to active tuberculosis (TB). Immunocompromising conditions, such as human immunodeficiency virus (HIV) infection, diabetes, chronic renal failure, and chemotherapy, are associated with the risk of progression from LTBI to active TB. People with LTBI represent a major reservoir for new active TB cases. Thus, the detection and management of LTBI is key to the world health organisation (WHO) goal to reduce TB incidence globally by 90% by the year 2035. The tuberculin skin test (TST) is the most widely used test for LTBI in low- and middle-income countries (LMICs). It involves the injection of tuberculin into the forearm skin of a participant. An induration – a subdermal lump – forms at the injection site 48 – 72 hours after the test. Using the Mantoux reading method, diagnosis is obtained using a pen and a ruler to measure the induration diameter and comparing it with consensus thresholds. Mantoux readings are subject to inter- and intra-observer subjective variations in readings. The manual nature of this method precludes any repeat analysis or validation after the 72-hour expiry of an induration. Furthermore, the Mantoux method does not provide any significant insight on the pathophysiology of indurations which could improve current understanding of LTBI. Recent applications of hyperspectral imaging (HSI) in other dermatological applications provides evidence of its viability in addressing the shortcomings of the TST. Thus, the aim of this research was to develop and validate an HSI-based approach for quantitative characterisation of TST indurations that can aid the diagnosis of LTBI. This aim was achieved through three objectives. The first objective was to develop and validate an HSI protocol for reliable and reproducible acquisition of spectral signatures of TST injection sites. An enclosure was designed to implement and validate the developed protocol. The validation was done using a range of light source types and ten participants with a wide range of skin tones. The effect of light source type on skin spectral signature was investigated to reveal factors that impact spectral reproducibility. The validated imaging protocol was utilized in the second objective to reliably capture the hyperspectral images of 70 participants (38 from South Africa and 32 from Vietnam). The objective was to develop and validate an HSI-model that can generate precise diameter estimations of TST indurations that are comparable to traditional Mantoux readings. Principal component analysis was utilized to transform the hyperspectral images (or hypercubes) into principal components and generate induration segmentation masks. Precise induration diameter estimations, which were comparable to corresponding Mantoux readings, were generated from the masks. An intraclass correlation coefficient score of 0.80, a median difference in reading of 0.29 mm, and a Pearson's correlation of 0.664 (p<0.001), was achieved between the HSI-based diameter estimations and corresponding Mantoux readings. This metrics surpassed the performance of similar studies. This is evidence that HSI can mitigate the subjectivity of the Mantoux method by generating comparable but more precise diameter estimations of TST indurations. The induration hypercubes and segmentation masks were utilized in the third objective to develop and validate an HSI framework capable of identifying biomarkers that accurately and consistently characterise TST indurations. The framework enabled the generation of chromophore maps from induration hypercubes. Radiomics was applied on the chromophore maps to generate a set of features. The features were used, in conjunction with a support vector machine model, to rank the ability of the generated chromophore maps to predict LTBI. Ferritin, water, and oxyhaemoglobin maps were identified as the most predictive chromophore maps for LTBI. The predictive accuracies for TST diagnosis using these chromophores were 90.0% across all participants, and 96.0% and 96.7% for the South African and Vietnamese participants. This is evidence that HSI can noninvasively facilitate the generation of chromophore biomarkers to characters TST indurations – a first of its kind in literature. These findings present HSI as a potential modality for mitigating the subjectivity of the Mantoux method and identifying digital biomarkers that noninvasively offer insights into induration pathophysiology. The potential impact of this research is improved health outcome for at-risk TBgroups via enhanced LTBI screening accuracy and precision. |
| format | Thesis |
| id | oai:open.uct.ac.za:11427/42630 |
| institution | University of Cape Town (South Africa) |
| language | English eng |
| last_indexed | 2026-06-10T12:32:34.479Z |
| license_str | Not specified — see source repository |
| provenance_str_mv | Harvested via OAI-PMH from UCTD — University of Cape Town Open Access Repository |
| publishDate | 2026 |
| publishDateRange | 2026 |
| publishDateSort | 2026 |
| publisher | Department of Human Biology |
| publisherStr | Department of Human Biology |
| record_format | dspace |
| source_str | UCTD — University of Cape Town Open Access Repository |
| spelling | oai:open.uct.ac.za:11427/42630 A quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening Oladokun, Ajibola Samson Malila, Bessie Mutsvangwa, Tinashe Skin Tuberculosis An estimated two billion people globally are believed to harbour latent tuberculosis infection (LTBI), which is a precursor to active tuberculosis (TB). Immunocompromising conditions, such as human immunodeficiency virus (HIV) infection, diabetes, chronic renal failure, and chemotherapy, are associated with the risk of progression from LTBI to active TB. People with LTBI represent a major reservoir for new active TB cases. Thus, the detection and management of LTBI is key to the world health organisation (WHO) goal to reduce TB incidence globally by 90% by the year 2035. The tuberculin skin test (TST) is the most widely used test for LTBI in low- and middle-income countries (LMICs). It involves the injection of tuberculin into the forearm skin of a participant. An induration – a subdermal lump – forms at the injection site 48 – 72 hours after the test. Using the Mantoux reading method, diagnosis is obtained using a pen and a ruler to measure the induration diameter and comparing it with consensus thresholds. Mantoux readings are subject to inter- and intra-observer subjective variations in readings. The manual nature of this method precludes any repeat analysis or validation after the 72-hour expiry of an induration. Furthermore, the Mantoux method does not provide any significant insight on the pathophysiology of indurations which could improve current understanding of LTBI. Recent applications of hyperspectral imaging (HSI) in other dermatological applications provides evidence of its viability in addressing the shortcomings of the TST. Thus, the aim of this research was to develop and validate an HSI-based approach for quantitative characterisation of TST indurations that can aid the diagnosis of LTBI. This aim was achieved through three objectives. The first objective was to develop and validate an HSI protocol for reliable and reproducible acquisition of spectral signatures of TST injection sites. An enclosure was designed to implement and validate the developed protocol. The validation was done using a range of light source types and ten participants with a wide range of skin tones. The effect of light source type on skin spectral signature was investigated to reveal factors that impact spectral reproducibility. The validated imaging protocol was utilized in the second objective to reliably capture the hyperspectral images of 70 participants (38 from South Africa and 32 from Vietnam). The objective was to develop and validate an HSI-model that can generate precise diameter estimations of TST indurations that are comparable to traditional Mantoux readings. Principal component analysis was utilized to transform the hyperspectral images (or hypercubes) into principal components and generate induration segmentation masks. Precise induration diameter estimations, which were comparable to corresponding Mantoux readings, were generated from the masks. An intraclass correlation coefficient score of 0.80, a median difference in reading of 0.29 mm, and a Pearson's correlation of 0.664 (p<0.001), was achieved between the HSI-based diameter estimations and corresponding Mantoux readings. This metrics surpassed the performance of similar studies. This is evidence that HSI can mitigate the subjectivity of the Mantoux method by generating comparable but more precise diameter estimations of TST indurations. The induration hypercubes and segmentation masks were utilized in the third objective to develop and validate an HSI framework capable of identifying biomarkers that accurately and consistently characterise TST indurations. The framework enabled the generation of chromophore maps from induration hypercubes. Radiomics was applied on the chromophore maps to generate a set of features. The features were used, in conjunction with a support vector machine model, to rank the ability of the generated chromophore maps to predict LTBI. Ferritin, water, and oxyhaemoglobin maps were identified as the most predictive chromophore maps for LTBI. The predictive accuracies for TST diagnosis using these chromophores were 90.0% across all participants, and 96.0% and 96.7% for the South African and Vietnamese participants. This is evidence that HSI can noninvasively facilitate the generation of chromophore biomarkers to characters TST indurations – a first of its kind in literature. These findings present HSI as a potential modality for mitigating the subjectivity of the Mantoux method and identifying digital biomarkers that noninvasively offer insights into induration pathophysiology. The potential impact of this research is improved health outcome for at-risk TBgroups via enhanced LTBI screening accuracy and precision. 2026-01-20T12:55:16Z 2026-01-20T12:55:16Z 2025 2026-01-20T12:52:45Z Thesis / Dissertation Doctoral PhD http://hdl.handle.net/11427/42630 en eng application/pdf Department of Human Biology Faculty of Health Sciences University of Cape Town |
| spellingShingle | Skin Tuberculosis Oladokun, Ajibola Samson A quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening |
| thesis_degree_str | Doctoral |
| title | A quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening |
| title_full | A quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening |
| title_fullStr | A quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening |
| title_full_unstemmed | A quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening |
| title_short | A quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening |
| title_sort | quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening |
| topic | Skin Tuberculosis |
| url | http://hdl.handle.net/11427/42630 |
| work_keys_str_mv | AT oladokunajibolasamson aquantitativecharacterizationoftuberculinskintestindurationsusinghyperspectralimagingtoenableautomatedlatenttuberculosisscreening AT oladokunajibolasamson quantitativecharacterizationoftuberculinskintestindurationsusinghyperspectralimagingtoenableautomatedlatenttuberculosisscreening |