Full Text Available
Note: Clicking the button above will open the full text document at the original institutional repository in a new window.
In silico identification of a putative two-component system in Pectobacterium brasiliense
Dissertation (MSc (Microbiology))--University of Pretoria, 2020.
Saved in:
| Other Authors: | |
|---|---|
| Format: | Thesis |
| Language: | English |
| Published: |
University of Pretoria
2020
|
| Subjects: | |
| Tags: |
No Tags, Be the first to tag this record!
|
| _version_ | 1867613614593015808 |
|---|---|
| access_status_str | Open Access |
| author2 | Moleleki, Lucy N. |
| author_browse | Moleleki, Lucy N. |
| author_facet | Moleleki, Lucy N. |
| collection | Thesis |
| dc_rights_str_mv | © 2019 University of Pretoria. All rights reserved. The copyright in this work vests in the University of Pretoria. No part of this work may be reproduced or transmitted in any form or by any means, without the prior written permission of the University of Pretoria. |
| description | Dissertation (MSc (Microbiology))--University of Pretoria, 2020. |
| format | Thesis |
| id | oai:repository.up.ac.za:2263/76536 |
| institution | University of Pretoria (South Africa) |
| language | English |
| last_indexed | 2026-06-10T12:38:57.201Z |
| license_str | Other — see source repository |
| provenance_str_mv | Harvested via OAI-PMH from UPSpace — University of Pretoria Institutional Repository |
| publishDate | 2020 |
| publishDateRange | 2020 |
| publishDateSort | 2020 |
| publisher | University of Pretoria |
| publisherStr | University of Pretoria |
| record_format | dspace |
| source_str | UPSpace — University of Pretoria Institutional Repository |
| spelling | oai:repository.up.ac.za:2263/76536 In silico identification of a putative two-component system in Pectobacterium brasiliense Moleleki, Lucy N. u12043754@tuks.co.za Bellieny-Rabello, Daniel Pretorius, Willem Jacob Stander Microbiology Dissertation (MSc (Microbiology))--University of Pretoria, 2020. Two component systems (TCSs) are one of the predominant methods for bacteria to detect and respond to environmental change. A typical TCS consists of a histidine kinase (HK), responsible for sensing inter- and intracellular changes, and a response regulator (RR) which as the name suggests responds to the detected stimuli, mostly by regulating DNA expression. In this project two predicted domains (Response_reg-like and HEF_like) were detected in 628 bacteria strains which share a high similarity to typical HKs and RRs with a 91.6% linkage observed across 644 genomic regions. The adjacent co-localisation between these genes carrying the novel predicted domains in addition to the conserved structural features of typical HKs and RRs, indicate that the Response_reg-like and HEF_HK-like domains could incorporate a new TCS in bacteria. With these HEF_HK-like and Response_reg-like domains, an overrepresented presence of restriction modification (RM) systems, especially type II RM was observed. The established presence of RM systems in the GHKL family domain HATPase_c_3 across most of the HEF_HK-containing genes could indicate an evolutionary relationship with the paraMORC family of ATPases. The aim of this project was to functionally characterize the putative HK and ultimately the entire novel TCS in Pectobacterium carotovorum subsp. brasiliense 1692 and optimise mutation analysis protocols for effective use in this enterobacteria species. This research was funded by the National Research Foundation (NRF), South Africa through Competitive Funding for Rated Researchers (CFRR) 98993. W.J.S.P. studentship was supported by The Research Technology Fund (RTF) 98654. D.B-R. was supported by The University of Pretoria Post-Doctoral Fellowship. Microbiology and Plant Pathology MSc (Microbiology) Restricted 2020-10-19T09:43:42Z 2020-10-19T09:43:42Z 2021 2020 Dissertation Pretorius, WJS 2020, In silico identification of a putative two-component system in Pectobacterium brasiliense, MSc (Microbiology) Dissertation, University of Pretoria, Pretoria, viewed yymmdd <http://hdl.handle.net/2263/76536> A2021 http://hdl.handle.net/2263/76536 en © 2019 University of Pretoria. All rights reserved. The copyright in this work vests in the University of Pretoria. No part of this work may be reproduced or transmitted in any form or by any means, without the prior written permission of the University of Pretoria. application/pdf University of Pretoria |
| spellingShingle | Microbiology In silico identification of a putative two-component system in Pectobacterium brasiliense |
| title | In silico identification of a putative two-component system in Pectobacterium brasiliense |
| title_full | In silico identification of a putative two-component system in Pectobacterium brasiliense |
| title_fullStr | In silico identification of a putative two-component system in Pectobacterium brasiliense |
| title_full_unstemmed | In silico identification of a putative two-component system in Pectobacterium brasiliense |
| title_short | In silico identification of a putative two-component system in Pectobacterium brasiliense |
| title_sort | in silico identification of a putative two component system in pectobacterium brasiliense |
| topic | Microbiology |
| url | http://hdl.handle.net/2263/76536 |